Variant report

Variant	rs1578287
Chromosome Location	chr6:102391908-102391909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1340275	0.94[AFR][1000 genomes]
rs1340278	0.94[AFR][1000 genomes]
rs1340279	0.94[AFR][1000 genomes]
rs1340280	0.94[AFR][1000 genomes]
rs1340281	0.94[AFR][1000 genomes]
rs1417171	0.94[AFR][1000 genomes]
rs1417172	0.94[AFR][1000 genomes]
rs1417173	0.94[AFR][1000 genomes]
rs1417174	0.94[AFR][1000 genomes]
rs1578286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578289	1.00[AMR][1000 genomes]
rs2518284	0.94[AFR][1000 genomes]
rs2791803	0.94[AFR][1000 genomes]
rs2791804	0.94[AFR][1000 genomes]
rs2852585	0.94[AFR][1000 genomes]
rs2852586	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102391400-102392600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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