Variant report
Variant | rs1417174 |
---|---|
Chromosome Location | chr6:102383107-102383108 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13201453 | 1.00[AMR][1000 genomes] |
rs1340267 | 0.83[YRI][hapmap] |
rs1340274 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap] |
rs1340275 | 0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1340278 | 0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1340279 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1340280 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1340281 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1417166 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap] |
rs1417167 | 0.93[YRI][hapmap] |
rs1417168 | 0.93[YRI][hapmap] |
rs1417171 | 1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1417172 | 0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1417173 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs1578286 | 1.00[AFR][1000 genomes] |
rs1578287 | 0.94[AFR][1000 genomes] |
rs1578288 | 1.00[AFR][1000 genomes] |
rs1578290 | 0.93[YRI][hapmap] |
rs1934669 | 0.91[YRI][hapmap] |
rs1934670 | 0.85[YRI][hapmap] |
rs1934672 | 0.93[YRI][hapmap] |
rs2039857 | 0.84[ASW][hapmap] |
rs2518212 | 0.84[ASW][hapmap] |
rs2518284 | 0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2791803 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2791804 | 0.93[YRI][hapmap];1.00[AFR][1000 genomes] |
rs2791843 | 0.82[ASW][hapmap] |
rs2852585 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2852586 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2852589 | 0.93[YRI][hapmap] |
rs2852590 | 0.92[YRI][hapmap] |
rs2852597 | 0.93[YRI][hapmap] |
rs2852598 | 1.00[ASW][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:102380200-102385000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr6:102381200-102383600 | Weak transcription | Liver | Liver |