Variant report

Variant	rs1934670
Chromosome Location	chr6:102386519-102386520
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1340267	0.92[YRI][hapmap]
rs1340274	0.93[YRI][hapmap]
rs1340275	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs1340278	0.92[YRI][hapmap];1.00[AFR][1000 genomes]
rs1340279	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs1340280	1.00[AFR][1000 genomes]
rs1340281	1.00[AFR][1000 genomes]
rs1417166	0.93[YRI][hapmap]
rs1417167	0.93[YRI][hapmap]
rs1417168	0.93[YRI][hapmap]
rs1417171	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs1417172	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs1417173	1.00[AFR][1000 genomes]
rs1417174	0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs1578286	1.00[AFR][1000 genomes]
rs1578287	0.94[AFR][1000 genomes]
rs1578288	1.00[AFR][1000 genomes]
rs1578290	0.93[YRI][hapmap]
rs1934669	0.91[YRI][hapmap]
rs1934672	0.93[YRI][hapmap]
rs2518284	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs2791803	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs2791804	0.93[YRI][hapmap];1.00[AFR][1000 genomes]
rs2852585	1.00[AFR][1000 genomes]
rs2852586	1.00[AFR][1000 genomes]
rs2852589	0.93[YRI][hapmap]
rs2852590	0.92[YRI][hapmap]
rs2852597	0.93[YRI][hapmap]
rs2852598	0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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