Variant report

Variant	rs1417171
Chromosome Location	chr6:102384837-102384838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102377981..102380751-chr6:102384114..102385937,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13201453	1.00[AMR][1000 genomes]
rs1340267	0.92[YRI][hapmap]
rs1340274	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs1340275	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340278	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340279	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1340281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417166	1.00[ASW][hapmap];0.92[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]
rs1417167	1.00[YRI][hapmap]
rs1417168	1.00[YRI][hapmap]
rs1417172	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1417174	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1578286	1.00[AFR][1000 genomes]
rs1578287	0.94[AFR][1000 genomes]
rs1578288	1.00[AFR][1000 genomes]
rs1578290	1.00[YRI][hapmap]
rs1934669	1.00[YRI][hapmap]
rs1934670	0.93[YRI][hapmap]
rs1934672	1.00[YRI][hapmap]
rs2039857	0.87[ASW][hapmap]
rs2518212	0.87[ASW][hapmap]
rs2518284	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2791803	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2791804	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2791807	0.81[YRI][hapmap]
rs2852585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2852586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2852589	1.00[YRI][hapmap]
rs2852590	1.00[YRI][hapmap]
rs2852597	1.00[YRI][hapmap]
rs2852598	1.00[ASW][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102380200-102385000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:102383200-102385800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:102384400-102385200	Enhancers	Cortex derived primary cultured neurospheres	brain

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