Variant report
| Variant | rs1340274 |
|---|---|
| Chromosome Location | chr6:102386070-102386071 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs1340267 | 0.92[YRI][hapmap] |
| rs1340275 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1340278 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1340279 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1340280 | 1.00[AFR][1000 genomes] |
| rs1340281 | 1.00[AFR][1000 genomes] |
| rs1417166 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap] |
| rs1417167 | 1.00[YRI][hapmap] |
| rs1417168 | 1.00[YRI][hapmap] |
| rs1417171 | 1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1417172 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1417173 | 1.00[AFR][1000 genomes] |
| rs1417174 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1578286 | 1.00[AFR][1000 genomes] |
| rs1578287 | 0.94[AFR][1000 genomes] |
| rs1578288 | 1.00[AFR][1000 genomes] |
| rs1578290 | 1.00[YRI][hapmap] |
| rs1934669 | 1.00[YRI][hapmap] |
| rs1934670 | 0.93[YRI][hapmap] |
| rs1934672 | 1.00[YRI][hapmap] |
| rs2039857 | 0.87[ASW][hapmap] |
| rs2518212 | 0.87[ASW][hapmap] |
| rs2518284 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2791803 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2791804 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2791807 | 0.81[YRI][hapmap] |
| rs2852585 | 1.00[AFR][1000 genomes] |
| rs2852586 | 1.00[AFR][1000 genomes] |
| rs2852589 | 1.00[YRI][hapmap] |
| rs2852590 | 1.00[YRI][hapmap] |
| rs2852597 | 1.00[YRI][hapmap] |
| rs2852598 | 1.00[ASW][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
