Variant report

Variant	rs2039857
Chromosome Location	chr6:102362350-102362351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs13201453	1.00[AMR][1000 genomes]
rs1340274	0.87[ASW][hapmap]
rs1340275	1.00[AMR][1000 genomes]
rs1340278	1.00[AMR][1000 genomes]
rs1340279	0.87[ASW][hapmap];1.00[AMR][1000 genomes]
rs1340280	1.00[AMR][1000 genomes]
rs1340281	1.00[AMR][1000 genomes]
rs1417166	0.87[ASW][hapmap]
rs1417171	0.87[ASW][hapmap];1.00[AMR][1000 genomes]
rs1417172	1.00[AMR][1000 genomes]
rs1417173	1.00[AMR][1000 genomes]
rs1417174	0.84[ASW][hapmap];1.00[AMR][1000 genomes]
rs17062735	0.82[ASW][hapmap];0.83[MKK][hapmap]
rs2518207	0.90[YRI][hapmap]
rs2518212	1.00[ASW][hapmap];0.90[YRI][hapmap]
rs2518215	0.90[YRI][hapmap]
rs2518284	1.00[AMR][1000 genomes]
rs2791803	0.87[ASW][hapmap];1.00[AMR][1000 genomes]
rs2791806	1.00[YRI][hapmap]
rs2791843	0.84[ASW][hapmap]
rs2791847	0.90[YRI][hapmap]
rs2791849	0.82[YRI][hapmap]
rs2852585	1.00[AMR][1000 genomes]
rs2852586	1.00[AMR][1000 genomes]
rs2852598	0.87[ASW][hapmap]
rs2852625	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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