Variant report

Variant	rs1578938
Chromosome Location	chr7:112817540-112817541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112815177..112817865-chr7:112886760..112888811,2	MCF-7	breast:
2	chr7:112814988..112817572-chr7:112818025..112820669,3	MCF-7	breast:
3	chr7:112815199..112817636-chr7:112823311..112824921,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10224243	0.97[ASN][1000 genomes]
rs10225200	1.00[JPT][hapmap]
rs10228219	1.00[JPT][hapmap]
rs10230904	1.00[ASN][1000 genomes]
rs10232392	1.00[JPT][hapmap]
rs10232767	1.00[ASN][1000 genomes]
rs10241250	1.00[JPT][hapmap]
rs10241676	1.00[JPT][hapmap]
rs10245889	1.00[ASN][1000 genomes]
rs10249359	1.00[JPT][hapmap]
rs10252483	1.00[JPT][hapmap]
rs10258099	1.00[JPT][hapmap]
rs10260432	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10260702	0.97[ASN][1000 genomes]
rs10261482	1.00[JPT][hapmap]
rs10261563	1.00[JPT][hapmap]
rs10267575	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10267803	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs10268166	1.00[ASN][1000 genomes]
rs10270797	1.00[JPT][hapmap]
rs10278104	1.00[JPT][hapmap]
rs10278248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10279811	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500019	1.00[JPT][hapmap]
rs10500022	1.00[ASN][1000 genomes]
rs11505916	1.00[ASN][1000 genomes]
rs12670138	1.00[JPT][hapmap]
rs12672405	1.00[JPT][hapmap]
rs12672763	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1525309	1.00[ASN][1000 genomes]
rs1599792	1.00[JPT][hapmap]
rs17160251	1.00[JPT][hapmap]
rs17160260	1.00[JPT][hapmap]
rs1917762	0.97[ASN][1000 genomes]
rs2140913	1.00[JPT][hapmap]
rs2246845	1.00[JPT][hapmap]
rs2272261	1.00[JPT][hapmap]
rs28583227	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28690390	1.00[ASN][1000 genomes]
rs4727779	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787425	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7800551	1.00[ASN][1000 genomes]
rs872944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3355135	chr7:112616979-113134651	Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv435847	chr7:112618576-113134022	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3430638	chr7:112620663-113134403	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv3442221	chr7:112620665-113134971	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv993501	chr7:112625029-113125338	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1022066	chr7:112630168-113122748	Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv539090	chr7:112630168-113122748	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv889059	chr7:112755548-112908788	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv889060	chr7:112766082-112994137	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112816200-112819000	Weak transcription	Muscle Satellite Cultured Cells	--

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