Variant report
| Variant | rs1584217 |
|---|---|
| Chromosome Location | chr8:117928099-117928100 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:117923883..117926723-chr8:117926921..117928752,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1050838 | 1.00[JPT][hapmap] |
| rs12550234 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs16888887 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs16889265 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2289938 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs2921727 | 0.88[EUR][1000 genomes] |
| rs2921734 | 0.90[EUR][1000 genomes] |
| rs2921735 | 0.92[EUR][1000 genomes] |
| rs2921736 | 0.92[EUR][1000 genomes] |
| rs3020167 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35396077 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3816342 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs4876688 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67280491 | 0.80[ASN][1000 genomes] |
| rs6989717 | 0.82[CEU][hapmap];1.00[JPT][hapmap] |
| rs7823787 | 0.88[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7828477 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7836868 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7839961 | 0.88[CEU][hapmap];0.93[CHB][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv831434 | chr8:117784467-117977825 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:117928000-117929600 | Enhancers | NHEK | skin |
