Variant report

Variant	rs16889265
Chromosome Location	chr8:117936482-117936483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1050838	1.00[JPT][hapmap]
rs12550234	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs1584217	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16888887	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs2289938	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs2921727	0.91[EUR][1000 genomes]
rs2921734	0.93[EUR][1000 genomes]
rs2921735	0.92[EUR][1000 genomes]
rs2921736	0.92[EUR][1000 genomes]
rs3020167	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35396077	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3816342	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs4876688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6989717	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs7823787	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7828477	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7836868	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7839961	0.94[CEU][hapmap];0.94[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117929400-117938600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:117929800-117938000	Weak transcription	HMEC	breast
3	chr8:117933400-117938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:117933400-117938400	Weak transcription	Hela-S3	cervix
5	chr8:117935400-117938600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:117936200-117937200	Enhancers	Rectal Smooth Muscle	rectum
7	chr8:117936400-117936600	Enhancers	Colon Smooth Muscle	Colon
8	chr8:117936400-117936800	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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