Variant report
| Variant | rs4876688 |
|---|---|
| Chromosome Location | chr8:117924501-117924502 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147677 | Chromatin interaction |
| ENSG00000147679 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs1050838 | 1.00[JPT][hapmap] |
| rs12550234 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs1584217 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16888887 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs16889265 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2289938 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs2921727 | 0.88[EUR][1000 genomes] |
| rs2921734 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2921735 | 0.92[EUR][1000 genomes] |
| rs2921736 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3020167 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs35396077 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3816342 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs67280491 | 0.80[ASN][1000 genomes] |
| rs6989717 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs7823787 | 0.94[CEU][hapmap];0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7828477 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7836868 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7839961 | 0.94[CEU][hapmap];0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv831434 | chr8:117784467-117977825 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
