Variant report

Variant	rs1584577
Chromosome Location	chr8:51213802-51213803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1450133	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914289	1.00[AFR][1000 genomes]
rs16914298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914410	0.85[YRI][hapmap]
rs16914667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914902	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16914905	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16919570	1.00[AMR][1000 genomes]
rs1824463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1904999	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1584577	SHE	trans	lymphoblastoid	seeQTL
rs1584577	ZEB2	trans	lymphoblastoid	seeQTL
rs1584577	LTF	trans	lymphoblastoid	seeQTL
rs1584577	SYPL2	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51209400-51220600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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