Variant report

Variant	rs158803
Chromosome Location	chr5:36911616-36911617
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:36908573..36910125-chr5:36910550..36913083,2	MCF-7	breast:
2	chr5:36903517..36905650-chr5:36910483..36913260,3	MCF-7	breast:
3	chr5:36910124..36911692-chr5:36912890..36915128,2	K562	blood:
4	chr5:36910368..36911914-chr5:36922337..36924698,2	MCF-7	breast:
5	chr5:36875178..36878850-chr5:36908740..36913582,7	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC1A3-1	chr5:36910492-36912362	l_2904_chr5:36907213-36912362_kidney

No data

Variant related genes	Relation type
ENSG00000164190	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12657771	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13158310	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13170811	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13176880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[EUR][1000 genomes]
rs13180309	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1466862	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs150380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs151944	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs158622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158623	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs158624	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs158791	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs158796	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs159749	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs159751	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs159753	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs159913	0.91[EUR][1000 genomes]
rs168662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs184182	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186173	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs188541	0.89[EUR][1000 genomes]
rs292172	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap]
rs292182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292183	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs292184	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs292194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs292195	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs300049	0.87[EUR][1000 genomes]
rs300051	0.86[EUR][1000 genomes]
rs300053	0.87[EUR][1000 genomes]
rs300055	0.90[EUR][1000 genomes]
rs300058	0.91[EUR][1000 genomes]
rs300060	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300061	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300063	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs300064	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs300065	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs301859	0.90[EUR][1000 genomes]
rs301901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs301917	0.91[EUR][1000 genomes]
rs3104057	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs388098	0.90[EUR][1000 genomes]
rs6875748	0.92[EUR][1000 genomes]
rs6899155	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36895800-36918800	Weak transcription	Small Intestine	intestine
2	chr5:36895800-36928600	Weak transcription	HSMM	muscle
3	chr5:36899000-36926400	Weak transcription	Gastric	stomach
4	chr5:36902600-36912800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:36902800-36912600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:36903800-36919200	Weak transcription	K562	blood
7	chr5:36904200-36914600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:36905000-36919400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:36905200-36914200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:36905200-36914200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:36905200-36914400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:36905200-36920000	Weak transcription	Primary B cells from cord blood	blood
13	chr5:36905200-36927800	Weak transcription	Psoas Muscle	Psoas
14	chr5:36906600-36915000	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:36906800-36912600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:36906800-36916200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:36907400-36928600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:36907400-36938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr5:36909000-36915400	Weak transcription	NHDF-Ad	bronchial
20	chr5:36909000-36915800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr5:36909200-36915600	Weak transcription	Fetal Heart	heart
22	chr5:36909200-36915800	Weak transcription	Stomach Mucosa	stomach
23	chr5:36909400-36912000	Weak transcription	GM12878-XiMat	blood
24	chr5:36909400-36920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:36909400-36921000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:36910200-36912000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr5:36910200-36913600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr5:36910200-36928000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr5:36910400-36912200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:36910600-36913600	Weak transcription	Left Ventricle	heart
31	chr5:36911000-36912600	Enhancers	Ovary	ovary
32	chr5:36911000-36919600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:36911200-36913800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr5:36911200-36928600	Weak transcription	A549	lung
35	chr5:36911400-36911800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:36911400-36911800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr5:36911400-36915800	Weak transcription	Brain Substantia Nigra	brain
38	chr5:36911400-36919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr5:36911400-36919400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:36911400-36920800	Weak transcription	Colon Smooth Muscle	Colon
41	chr5:36911600-36912000	Weak transcription	Primary T cells from cord blood	blood
42	chr5:36911600-36915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:36911600-36919200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr5:36911600-36919600	Weak transcription	Brain Anterior Caudate	brain
45	chr5:36911600-36928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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