Variant report

Variant	rs1589433
Chromosome Location	chr1:151666512-151666513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151665857..151667896-chr1:151669494..151672428,3	K562	blood:
2	chr1:151665857..151667838-chr1:151669687..151671495,2	K562	blood:
3	chr1:151665022..151667195-chr1:151671902..151674040,3	K562	blood:
4	chr1:151665907..151667652-chr1:151811543..151813267,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225556	Chromatin interaction
ENSG00000227045	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10157548	1.00[AMR][1000 genomes]
rs11204864	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204869	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060252	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067057	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070025	1.00[AMR][1000 genomes]
rs12073164	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073259	1.00[AFR][1000 genomes]
rs12074567	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090837	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833464	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833469	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1891590	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1937355	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692271	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6701219	1.00[AMR][1000 genomes]
rs959290	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:151611600-151668200	Weak transcription	Gastric	stomach
3	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
5	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
7	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
9	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
11	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
12	chr1:151654800-151678000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:151658000-151674800	Strong transcription	Fetal Muscle Leg	muscle
14	chr1:151659200-151667600	Weak transcription	Fetal Brain Male	brain
15	chr1:151660400-151675400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr1:151661600-151675400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:151662000-151670400	Weak transcription	Fetal Heart	heart
18	chr1:151663000-151675400	Strong transcription	Fetal Stomach	stomach
19	chr1:151663200-151667200	Strong transcription	Colonic Mucosa	Colon
20	chr1:151663200-151677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr1:151663200-151683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:151664200-151672800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:151664200-151674200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr1:151664200-151674600	Strong transcription	Primary T cells from cord blood	blood
25	chr1:151664200-151674800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:151664200-151675000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:151664400-151666600	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr1:151664400-151668800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr1:151664400-151672200	Strong transcription	Fetal Intestine Small	intestine
30	chr1:151664400-151672400	Strong transcription	Fetal Intestine Large	intestine
31	chr1:151664400-151672400	Strong transcription	Thymus	Thymus
32	chr1:151664400-151674400	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:151664400-151674600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr1:151664400-151674600	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr1:151664400-151674800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:151664400-151675400	Strong transcription	Stomach Smooth Muscle	stomach
37	chr1:151664600-151667200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:151664600-151667200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr1:151664600-151674200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr1:151664600-151674600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr1:151664600-151674600	Strong transcription	Fetal Thymus	thymus
42	chr1:151664600-151675000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr1:151664800-151666800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr1:151664800-151667000	Strong transcription	NHEK	skin
45	chr1:151664800-151668000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:151664800-151672200	Strong transcription	Brain Germinal Matrix	brain
47	chr1:151664800-151674400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr1:151664800-151674600	Strong transcription	Adipose Nuclei	Adipose
49	chr1:151664800-151674600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr1:151664800-151674800	Strong transcription	Spleen	Spleen

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