Variant report

Variant	rs16833469
Chromosome Location	chr1:151660524-151660525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151659536..151662193-chr1:151663532..151665631,2	MCF-7	breast:
2	chr1:151658558..151661445-chr1:151669676..151671900,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10157548	1.00[AMR][1000 genomes]
rs11204864	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204869	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204870	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060252	1.00[AMR][1000 genomes]
rs12067057	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070025	1.00[AMR][1000 genomes]
rs12073164	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073259	0.95[AFR][1000 genomes]
rs12074567	1.00[AMR][1000 genomes]
rs12090837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1589433	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833464	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1891590	1.00[AMR][1000 genomes]
rs1937355	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6681978	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692271	1.00[AMR][1000 genomes]
rs6701219	1.00[AMR][1000 genomes]
rs959290	1.00[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
2	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
4	chr1:151610600-151665000	Weak transcription	Lung	lung
5	chr1:151611600-151668200	Weak transcription	Gastric	stomach
6	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:151626800-151665400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:151627200-151670600	Weak transcription	Small Intestine	intestine
9	chr1:151627400-151676000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:151628200-151669800	Weak transcription	Esophagus	oesophagus
11	chr1:151632200-151665000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:151632200-151667400	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr1:151632400-151664400	Weak transcription	Thymus	Thymus
14	chr1:151638600-151675600	Weak transcription	Psoas Muscle	Psoas
15	chr1:151642000-151665000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:151642200-151665000	Weak transcription	K562	blood
17	chr1:151642800-151665000	Weak transcription	Fetal Brain Female	brain
18	chr1:151643000-151665000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr1:151643600-151665000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:151643800-151669800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:151644000-151664600	Weak transcription	Fetal Thymus	thymus
22	chr1:151644000-151665000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:151644000-151665000	Weak transcription	Brain Angular Gyrus	brain
24	chr1:151644000-151665000	Weak transcription	Pancreas	Pancrea
25	chr1:151644200-151664400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:151644200-151665000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr1:151644200-151665000	Weak transcription	Ovary	ovary
28	chr1:151644200-151665200	Weak transcription	Brain Substantia Nigra	brain
29	chr1:151644400-151665000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:151644800-151665200	Weak transcription	Brain Hippocampus Middle	brain
31	chr1:151646600-151665800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:151649000-151662000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr1:151650600-151663400	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr1:151651200-151664800	Weak transcription	Brain Germinal Matrix	brain
35	chr1:151653000-151661000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr1:151653400-151665000	Weak transcription	HSMM	muscle
37	chr1:151653400-151669400	Weak transcription	HSMMtube	muscle
38	chr1:151653400-151671600	Weak transcription	Stomach Mucosa	stomach
39	chr1:151653600-151662200	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr1:151653600-151665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:151653600-151665000	Weak transcription	Osteobl	bone
42	chr1:151653600-151665200	Weak transcription	NHDF-Ad	bronchial
43	chr1:151653800-151661200	Weak transcription	Fetal Heart	heart
44	chr1:151654200-151665000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:151654600-151660800	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr1:151654600-151665000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:151654600-151666200	Weak transcription	HMEC	breast
48	chr1:151654800-151664800	Weak transcription	NHEK	skin
49	chr1:151654800-151665000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr1:151654800-151665000	Weak transcription	A549	lung

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