Variant report

Variant	rs1937355
Chromosome Location	chr1:151630419-151630420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:151625892..151628337-chr1:151629163..151630750,2	MCF-7	breast:
2	chr1:151628251..151631523-chr1:151631798..151635161,3	MCF-7	breast:
3	1:151402394-151411623..1:151618750-151636526	GM12878	blood:
4	chr1:151512144..151513669-chr1:151629955..151632572,2	MCF-7	breast:
5	chr1:151629068..151630883-chr1:151630924..151632561,2	MCF-7	breast:
6	1:151171193-151178589..1:151618750-151636526	Hela-S3	cervix:
7	chr1:151626801..151630582-chr1:151633490..151635442,3	MCF-7	breast:
8	1:151592347-151603110..1:151618750-151636526	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000143398	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000238711	Chromatin interaction
ENSG00000206635	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10157548	1.00[AMR][1000 genomes]
rs11204864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11204870	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060252	1.00[AMR][1000 genomes]
rs12067057	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070025	1.00[AMR][1000 genomes]
rs12073164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073259	0.92[AFR][1000 genomes]
rs12074567	1.00[AMR][1000 genomes]
rs12090837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1589433	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833464	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16833469	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1891590	1.00[AMR][1000 genomes]
rs6681978	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6692271	1.00[AMR][1000 genomes]
rs6701219	1.00[AMR][1000 genomes]
rs959290	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv2843	chr1:151600069-151644709	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151587600-151640600	Weak transcription	Fetal Brain Male	brain
2	chr1:151588200-151665200	Weak transcription	Aorta	Aorta
3	chr1:151591000-151630800	Weak transcription	Fetal Kidney	kidney
4	chr1:151591200-151675400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:151592600-151633800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:151592800-151630600	Weak transcription	Hela-S3	cervix
7	chr1:151594000-151652800	Weak transcription	Right Ventricle	heart
8	chr1:151603000-151663200	Weak transcription	Colonic Mucosa	Colon
9	chr1:151606800-151630800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:151608200-151630600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:151610200-151633800	Weak transcription	HUVEC	blood vessel
12	chr1:151610600-151630600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr1:151610600-151631000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr1:151610600-151652200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:151610600-151665000	Weak transcription	Lung	lung
16	chr1:151610800-151631000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr1:151611400-151631000	Weak transcription	Brain Anterior Caudate	brain
18	chr1:151611600-151633000	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:151611600-151634200	Weak transcription	Psoas Muscle	Psoas
20	chr1:151611600-151637600	Weak transcription	Fetal Heart	heart
21	chr1:151611600-151639800	Weak transcription	K562	blood
22	chr1:151611600-151640600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:151611600-151643800	Weak transcription	Pancreas	Pancrea
24	chr1:151611600-151668200	Weak transcription	Gastric	stomach
25	chr1:151612200-151630800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:151612400-151634600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:151612800-151630800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:151612800-151633800	Weak transcription	HSMM	muscle
29	chr1:151612800-151652400	Weak transcription	HMEC	breast
30	chr1:151613800-151630600	Weak transcription	NH-A	brain
31	chr1:151614000-151630600	Weak transcription	Brain Angular Gyrus	brain
32	chr1:151614000-151630600	Weak transcription	NHEK	skin
33	chr1:151618000-151642600	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:151618000-151667600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:151619400-151630600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr1:151620800-151631800	Weak transcription	Left Ventricle	heart
37	chr1:151621400-151632000	Weak transcription	Fetal Lung	lung
38	chr1:151621600-151630600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:151622400-151630600	Weak transcription	Fetal Thymus	thymus
40	chr1:151622800-151643600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:151623000-151630600	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr1:151623000-151630600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr1:151623000-151630600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr1:151623000-151631000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:151623000-151641600	Weak transcription	Ovary	ovary
46	chr1:151624000-151632000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr1:151625000-151636600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:151625600-151644800	Strong transcription	Dnd41	blood
49	chr1:151626000-151630600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr1:151626000-151632000	Weak transcription	NHDF-Ad	bronchial

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