Variant report

Variant	rs159490
Chromosome Location	chr5:94250441-94250442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs153071	0.82[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs159026	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs159038	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs248676	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs26996	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs27918	0.88[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94233400-94251600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr5:94237800-94254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:94239800-94255200	Weak transcription	Brain Germinal Matrix	brain
4	chr5:94241800-94255600	Weak transcription	Primary T cells from cord blood	blood
5	chr5:94242200-94260400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94242200-94266200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:94247400-94253800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:94247400-94275000	Weak transcription	Adipose Nuclei	Adipose
9	chr5:94248600-94257200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:94248600-94257200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94248600-94272600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:94248800-94253000	Weak transcription	HUVEC	blood vessel
13	chr5:94248800-94260200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:94249000-94252800	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:94249800-94250600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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