Variant report

Variant	rs1597466
Chromosome Location	chr3:150055561-150055562
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150043311..150046548-chr3:150053345..150055607,3	K562	blood:
2	chr3:150049487..150053586-chr3:150054958..150059375,5	MCF-7	breast:
3	chr3:150054687..150056329-chr3:150057866..150060017,2	MCF-7	breast:
4	chr3:150033630..150035531-chr3:150055443..150057984,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1562788	1.00[CHB][hapmap]
rs1597467	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862607	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862610	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060662	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454055	1.00[ASN][1000 genomes]
rs4301033	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59195912	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61217677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269236	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271363	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271364	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271368	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271395	1.00[ASN][1000 genomes]
rs6440677	1.00[CHB][hapmap]
rs6767155	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7614962	1.00[ASN][1000 genomes]
rs7616723	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617699	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7636643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810244	1.00[ASN][1000 genomes]
rs9836480	1.00[CHB][hapmap]
rs9862778	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv523838	chr3:150055561-150056041	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150043400-150059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:150053000-150066600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:150053400-150062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:150053400-150062000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr3:150053600-150057800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:150053800-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:150053800-150062000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:150054800-150061800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:150055000-150061800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:150055000-150061800	Weak transcription	NHEK	skin
11	chr3:150055200-150061800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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