Variant report

Variant	rs4301033
Chromosome Location	chr3:150042618-150042619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150032292..150033945-chr3:150042030..150044960,2	K562	blood:
2	chr3:150041773..150044252-chr3:150087797..150089469,2	MCF-7	breast:
3	chr3:150034801..150039393-chr3:150040930..150043727,5	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1597466	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597467	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862607	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862610	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060662	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454055	1.00[ASN][1000 genomes]
rs59195912	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61217677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62269236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271364	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271368	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271395	1.00[ASN][1000 genomes]
rs6767155	1.00[ASN][1000 genomes]
rs7614962	1.00[ASN][1000 genomes]
rs7616723	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617025	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617699	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7636643	1.00[CEU][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810244	1.00[ASN][1000 genomes]
rs9862778	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Adiponectin levels	22479202	GWAS catalog

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:150037800-150042800	Weak transcription	NHLF	lung
3	chr3:150038200-150045400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:150038400-150047400	Weak transcription	NHEK	skin
5	chr3:150038600-150046400	Weak transcription	HMEC	breast
6	chr3:150038600-150047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:150039800-150042800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:150041000-150044200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr3:150041200-150043800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:150041400-150043600	Enhancers	Placenta	Placenta
11	chr3:150041600-150043400	Enhancers	Hela-S3	cervix
12	chr3:150041600-150046400	Enhancers	Fetal Lung	lung
13	chr3:150041800-150042800	Enhancers	Stomach Mucosa	stomach
14	chr3:150041800-150042800	Enhancers	A549	lung
15	chr3:150041800-150043400	Enhancers	Fetal Intestine Large	intestine
16	chr3:150041800-150043400	Enhancers	NHDF-Ad	bronchial
17	chr3:150041800-150044000	Enhancers	Fetal Intestine Small	intestine
18	chr3:150042000-150043800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr3:150042200-150043200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:150042200-150043200	Enhancers	Fetal Heart	heart
21	chr3:150042200-150043800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr3:150042400-150043400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:150042400-150043800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:150042600-150042800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:150042600-150043200	Enhancers	Osteobl	bone
26	chr3:150042600-150043400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr3:150042600-150043600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr3:150042600-150047400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr3:150042600-150051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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