Variant report

Variant	rs62269236
Chromosome Location	chr3:150044641-150044642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150032292..150033945-chr3:150042030..150044960,2	K562	blood:
2	chr3:150043311..150046548-chr3:150053345..150055607,3	K562	blood:
3	chr3:150037672..150039403-chr3:150044419..150047378,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1597466	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1597467	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862607	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16862610	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2060662	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28454055	1.00[ASN][1000 genomes]
rs4301033	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59195912	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61217677	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271363	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271364	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271368	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62271395	1.00[ASN][1000 genomes]
rs6767155	1.00[ASN][1000 genomes]
rs7614962	1.00[ASN][1000 genomes]
rs7616723	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617025	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7617699	1.00[ASN][1000 genomes]
rs7636643	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9810244	1.00[ASN][1000 genomes]
rs9862778	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:150038200-150045400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:150038400-150047400	Weak transcription	NHEK	skin
4	chr3:150038600-150046400	Weak transcription	HMEC	breast
5	chr3:150038600-150047400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:150041600-150046400	Enhancers	Fetal Lung	lung
7	chr3:150042600-150047400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150042600-150051400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:150042800-150048400	Weak transcription	A549	lung
10	chr3:150043400-150046200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:150043400-150046400	Weak transcription	Fetal Intestine Large	intestine
12	chr3:150043400-150051000	Weak transcription	Hela-S3	cervix
13	chr3:150043400-150059600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:150043600-150045800	Weak transcription	Placenta	Placenta
15	chr3:150043600-150046200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:150043800-150045200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:150043800-150045400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:150043800-150046000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr3:150043800-150049800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:150043800-150052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:150044000-150047400	Weak transcription	Fetal Intestine Small	intestine
22	chr3:150044200-150045600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:150044400-150044800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr3:150044600-150044800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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