Variant report

Variant	rs1606503
Chromosome Location	chr3:111380635-111380636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13078891	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086157	0.92[CEU][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1355767	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs1398747	0.93[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1553970	0.89[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2036995	0.93[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2036996	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35957576	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682052	0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682292	0.89[ASN][1000 genomes]
rs4682295	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62275506	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs867293	0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111374000-111385200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:111378600-111381800	ZNF genes & repeats	Dnd41	blood
3	chr3:111378600-111382200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:111379200-111381200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:111379200-111382200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr3:111379400-111382200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr3:111379800-111381000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
8	chr3:111379800-111381200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr3:111379800-111381800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr3:111380000-111381200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
11	chr3:111380000-111381200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:111380000-111382200	ZNF genes & repeats	Thymus	Thymus
13	chr3:111380000-111382600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
14	chr3:111380400-111381200	ZNF genes & repeats	Fetal Thymus	thymus
15	chr3:111380400-111382000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
16	chr3:111380400-111382400	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr3:111380600-111381000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
18	chr3:111380600-111381000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:111380600-111381200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:111380600-111381200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:111380600-111381800	Weak transcription	Gastric	stomach

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