Variant report

Variant	rs4682295
Chromosome Location	chr3:111378363-111378364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13078891	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086157	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1398747	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1553970	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1606503	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2036995	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2036996	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35957576	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4682052	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4682292	0.89[ASN][1000 genomes]
rs62275506	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs867293	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111372200-111378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr3:111372200-111378600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr3:111372200-111380600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:111372400-111380400	Weak transcription	Fetal Thymus	thymus
5	chr3:111373200-111380000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:111373400-111379400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr3:111373400-111379800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr3:111373600-111379200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr3:111373600-111379800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:111373600-111380000	Weak transcription	Thymus	Thymus
11	chr3:111373800-111378800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr3:111374000-111379800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr3:111374000-111385200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr3:111374200-111378600	Weak transcription	Dnd41	blood
15	chr3:111374600-111378800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr3:111374600-111380000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:111374800-111379000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr3:111377000-111378400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:111378200-111380400	Strong transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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