Variant report

Variant	rs4682052
Chromosome Location	chr3:111353472-111353473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11707702	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13078891	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13086157	0.96[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13317162	1.00[YRI][hapmap]
rs1398747	0.85[CEU][hapmap]
rs1553970	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1606503	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2036995	1.00[ASW][hapmap];0.85[CEU][hapmap];0.82[CHB][hapmap];0.92[MEX][hapmap];0.84[AFR][1000 genomes]
rs2036996	0.84[CEU][hapmap]
rs35957576	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4682292	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4682295	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs867293	0.89[CEU][hapmap];0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4682052	ZBED2	cis	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111346400-111357600	Weak transcription	HMEC	breast
2	chr3:111346600-111357600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:111346800-111356800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr3:111346800-111357000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:111346800-111357600	Weak transcription	Thymus	Thymus
6	chr3:111346800-111357800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr3:111347000-111356600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:111347000-111367200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:111347600-111355200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:111347600-111367800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:111347800-111354800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:111347800-111355000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:111347800-111355000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:111347800-111355000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:111347800-111357000	Weak transcription	Fetal Thymus	thymus
16	chr3:111348000-111355400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:111348200-111354400	Weak transcription	Dnd41	blood
18	chr3:111348400-111355400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:111348800-111356600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:111349000-111354800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr3:111350400-111355000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:111351800-111360200	Strong transcription	Primary T cells from cord blood	blood

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