Variant report

Variant	rs1613599
Chromosome Location	chr2:58966760-58966761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10165014	0.85[ASN][1000 genomes]
rs10193538	0.85[ASN][1000 genomes]
rs10204566	0.81[ASN][1000 genomes]
rs12986742	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2708149	0.86[ASN][1000 genomes]
rs2862872	0.84[ASN][1000 genomes]
rs2862873	0.87[ASN][1000 genomes]
rs2862874	0.83[ASN][1000 genomes]
rs6419632	0.86[ASN][1000 genomes]
rs6723486	0.86[ASN][1000 genomes]
rs6731121	0.84[ASN][1000 genomes]
rs6759519	0.85[ASN][1000 genomes]
rs6759757	0.84[ASN][1000 genomes]
rs727856	0.83[ASN][1000 genomes]
rs727857	0.84[ASN][1000 genomes]
rs7596101	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7597839	0.82[ASN][1000 genomes]
rs963537	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv528866	chr2:58955953-58975143	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1613599	USP34	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58963000-58968200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:58964200-58967000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:58966400-58966800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links