Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165014	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10193538	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12986742	0.86[ASN][1000 genomes]
rs1613599	0.81[ASN][1000 genomes]
rs2862872	0.90[ASN][1000 genomes]
rs2862873	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2862874	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6419632	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6545701	0.84[ASN][1000 genomes]
rs6545702	0.82[ASN][1000 genomes]
rs6723486	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6731121	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6748058	0.82[ASN][1000 genomes]
rs6759519	0.94[ASN][1000 genomes]
rs6759757	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs727856	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs727857	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7596101	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7597839	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs963537	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10204566	USP34	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58997800-58999600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:58997800-59005200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:58998000-59000000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:58999400-58999600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:58999400-59002000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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