Variant report

Variant	rs6545701
Chromosome Location	chr2:59027954-59027955
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10165014	0.83[ASN][1000 genomes]
rs10193538	0.83[ASN][1000 genomes]
rs10204566	0.84[ASN][1000 genomes]
rs12617233	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2862873	0.81[ASN][1000 genomes]
rs2862874	0.84[ASN][1000 genomes]
rs6419632	0.82[ASN][1000 genomes]
rs6545700	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6545702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6723486	0.82[ASN][1000 genomes]
rs6731121	0.84[ASN][1000 genomes]
rs6748058	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6759519	0.83[ASN][1000 genomes]
rs6759757	0.82[ASN][1000 genomes]
rs727856	0.81[ASN][1000 genomes]
rs727857	0.82[ASN][1000 genomes]
rs7571059	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7597839	0.84[ASN][1000 genomes]
rs963537	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:59027800-59028400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:59027800-59028400	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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