Variant report

Variant	rs1618515
Chromosome Location	chr3:99347057-99347058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2036987	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs534705	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs590618	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671381	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671779	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611197	0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs7614330	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9289859	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9845274	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1618515	SLC4A9	trans	cerebellum	SCAN
rs1618515	TFG	cis	multi-tissue	Pritchard

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
2	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99346000-99347400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:99346400-99349200	Weak transcription	NHEK	skin
5	chr3:99346400-99352800	Weak transcription	NHLF	lung
6	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
7	chr3:99346600-99349200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:99346600-99349200	Weak transcription	HMEC	breast
9	chr3:99346600-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:99347000-99347800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:99347000-99352600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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