Variant report

Variant	rs671779
Chromosome Location	chr3:99345311-99345312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1618515	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2036987	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs534705	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs590618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs671381	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611197	0.91[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7614330	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9289859	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9845274	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99333600-99345800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:99340400-99346000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
4	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:99343400-99346400	Enhancers	Hela-S3	cervix
6	chr3:99343800-99346400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:99343800-99346600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:99343800-99347000	Enhancers	Osteobl	bone
9	chr3:99344000-99346600	Enhancers	NHDF-Ad	bronchial
10	chr3:99344400-99346600	Enhancers	HUVEC	blood vessel
11	chr3:99344600-99345400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:99344600-99345600	Weak transcription	HMEC	breast
13	chr3:99344600-99345600	Weak transcription	HSMM	muscle
14	chr3:99344600-99346400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:99344800-99345400	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:99345000-99346200	Enhancers	GM12878-XiMat	blood
17	chr3:99345200-99345400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:99345200-99346400	Enhancers	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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