Variant report

Variant	rs590618
Chromosome Location	chr3:99346653-99346654
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1355765	0.82[CEU][hapmap]
rs1513300	0.82[CEU][hapmap]
rs1618515	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2036987	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs534705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs671381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671779	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611197	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7614330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9289859	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9824449	0.81[CEU][hapmap]
rs9845274	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99341000-99352800	Weak transcription	Aorta	Aorta
2	chr3:99343000-99347200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:99343800-99347000	Enhancers	Osteobl	bone
4	chr3:99345400-99347000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr3:99346000-99346800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:99346000-99347400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:99346200-99347000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:99346400-99349200	Weak transcription	NHEK	skin
9	chr3:99346400-99352800	Weak transcription	NHLF	lung
10	chr3:99346400-99355800	Weak transcription	Hela-S3	cervix
11	chr3:99346600-99349200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:99346600-99349200	Weak transcription	HMEC	breast
13	chr3:99346600-99352800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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