Variant report

Variant	rs1620257
Chromosome Location	chr9:15157067-15157068
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10122193	0.83[AMR][1000 genomes]
rs10738388	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10738389	1.00[JPT][hapmap]
rs1780149	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830727	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1853479	0.82[AMR][1000 genomes]
rs2057479	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2096366	0.84[AMR][1000 genomes]
rs2506759	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761130	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2761135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761136	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761139	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800577	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800582	1.00[ASN][1000 genomes]
rs2800585	0.82[ASN][1000 genomes]
rs2800591	1.00[JPT][hapmap]
rs702198	1.00[ASN][1000 genomes]
rs7026350	1.00[ASN][1000 genomes]
rs932711	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs932712	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932713	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971834	1.00[CHB][hapmap]
rs971835	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15146800-15160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:15152600-15157600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:15153000-15157200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:15154800-15159200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:15155400-15159200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:15155400-15159200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr9:15155400-15161400	Enhancers	Osteobl	bone
8	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:15155800-15157800	Enhancers	Adipose Nuclei	Adipose
10	chr9:15155800-15158200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:15155800-15159000	Enhancers	Hela-S3	cervix
12	chr9:15156000-15158400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:15156200-15157200	Enhancers	Fetal Stomach	stomach
14	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:15156400-15157600	Enhancers	Fetal Brain Male	brain
16	chr9:15156400-15171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:15156600-15157600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr9:15156600-15157600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:15156600-15157800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:15156600-15157800	Enhancers	Left Ventricle	heart
21	chr9:15156600-15157800	Enhancers	Right Atrium	heart
22	chr9:15156600-15157800	Enhancers	Right Ventricle	heart
23	chr9:15156600-15158000	Enhancers	Brain Germinal Matrix	brain
24	chr9:15156600-15158200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:15156800-15157600	Weak transcription	Ovary	ovary
27	chr9:15156800-15157800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr9:15156800-15158800	Weak transcription	NH-A	brain
29	chr9:15156800-15162200	Weak transcription	Fetal Brain Female	brain
30	chr9:15156800-15169000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:15156800-15170200	Weak transcription	Esophagus	oesophagus
32	chr9:15156800-15170800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
36	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
37	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:15157000-15157200	Weak transcription	Aorta	Aorta
39	chr9:15157000-15157400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:15157000-15157400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:15157000-15157400	Weak transcription	Liver	Liver
42	chr9:15157000-15158200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:15157000-15158400	Weak transcription	HUVEC	blood vessel

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