Variant report

Variant	rs2761139
Chromosome Location	chr9:15158609-15158610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10122193	0.88[AMR][1000 genomes]
rs10122198	0.81[AMR][1000 genomes]
rs10738388	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10738389	1.00[JPT][hapmap]
rs1620257	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1780149	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830727	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853479	0.87[AMR][1000 genomes]
rs2057479	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096366	0.89[AMR][1000 genomes]
rs2506759	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761130	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761135	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761136	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800577	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800582	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800584	0.81[EUR][1000 genomes]
rs2800585	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2800591	1.00[JPT][hapmap]
rs702198	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7026350	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932711	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932712	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932713	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971834	1.00[CHB][hapmap]
rs971835	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1019567	chr9:15031398-15159409	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv17700	chr9:15157502-15159344	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
4	esv3481990	chr9:15157535-15159881	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3481991	chr9:15157578-15159874	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3481992	chr9:15157600-15159830	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3481993	chr9:15157620-15159824	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3481994	chr9:15157711-15159775	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv1805066	chr9:15157746-15159378	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv1808348	chr9:15157746-15159378	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv1814396	chr9:15157746-15159378	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv2422124	chr9:15157746-15159421	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv1805441	chr9:15157746-15165032	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15146800-15160400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:15154800-15159200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:15155400-15159200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:15155400-15159200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr9:15155400-15161400	Enhancers	Osteobl	bone
6	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:15155800-15159000	Enhancers	Hela-S3	cervix
8	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:15156400-15171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:15156800-15158800	Weak transcription	NH-A	brain
12	chr9:15156800-15162200	Weak transcription	Fetal Brain Female	brain
13	chr9:15156800-15169000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:15156800-15170200	Weak transcription	Esophagus	oesophagus
15	chr9:15156800-15170800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
20	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:15157400-15159000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:15157400-15159000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:15157600-15159000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:15157600-15162600	Weak transcription	Fetal Brain Male	brain
25	chr9:15157800-15158800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:15157800-15159000	Enhancers	HMEC	breast
27	chr9:15158000-15159000	Weak transcription	NHEK	skin
28	chr9:15158000-15160800	Weak transcription	Ovary	ovary
29	chr9:15158200-15158800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr9:15158400-15159800	Enhancers	HUVEC	blood vessel
31	chr9:15158400-15160000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:15158600-15158800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:15158600-15158800	Enhancers	Aorta	Aorta
34	chr9:15158600-15168000	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links