Variant report

Variant	rs1780149
Chromosome Location	chr9:15161236-15161237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10122193	0.90[AMR][1000 genomes]
rs10122198	0.83[AMR][1000 genomes]
rs10738388	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10738389	1.00[JPT][hapmap]
rs1620257	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830727	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1853479	0.89[AMR][1000 genomes]
rs2057479	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096366	0.91[AMR][1000 genomes]
rs2506759	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761130	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2761135	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761136	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2761139	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800577	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800582	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800585	0.82[ASN][1000 genomes]
rs2800591	1.00[JPT][hapmap]
rs702198	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7026350	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932711	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932712	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932713	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs971834	1.00[CHB][hapmap]
rs971835	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831519	chr9:15018160-15209127	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1805441	chr9:15157746-15165032	Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv1814028	chr9:15159378-15167943	Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15155400-15161400	Enhancers	Osteobl	bone
2	chr9:15155600-15181400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr9:15156200-15185400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:15156400-15171200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:15156600-15194200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr9:15156800-15162200	Weak transcription	Fetal Brain Female	brain
7	chr9:15156800-15169000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:15156800-15170200	Weak transcription	Esophagus	oesophagus
9	chr9:15156800-15170800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:15156800-15173800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:15156800-15175600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:15156800-15181600	Weak transcription	Fetal Muscle Leg	muscle
13	chr9:15156800-15190400	Weak transcription	Brain Anterior Caudate	brain
14	chr9:15156800-15211800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:15157600-15162600	Weak transcription	Fetal Brain Male	brain
16	chr9:15158600-15168000	Weak transcription	Liver	Liver
17	chr9:15158800-15162200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:15158800-15168000	Weak transcription	Aorta	Aorta
19	chr9:15159000-15166600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:15159000-15170800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr9:15159000-15177000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:15159000-15211200	Weak transcription	HMEC	breast
23	chr9:15159200-15168000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:15159200-15169000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:15159200-15205800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:15160000-15161400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:15160200-15162800	Enhancers	NHLF	lung
28	chr9:15160400-15161400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:15161000-15169000	Weak transcription	Fetal Intestine Large	intestine
30	chr9:15161200-15161800	Weak transcription	Ovary	ovary
31	chr9:15161200-15162000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr9:15161200-15181400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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