The 2.0 version of rSNPBase

Variant report

Variant rs1626329
Chromosome Location chr12:121622023-121622024
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:58 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:121571800-121623200 Weak transcription Colonic Mucosa Colon
2 chr12:121583000-121634600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr12:121583800-121623600 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr12:121583800-121634400 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr12:121584600-121626600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
6 chr12:121586200-121623600 Weak transcription Rectal Smooth Muscle rectum
7 chr12:121594200-121627600 Weak transcription Right Ventricle heart
8 chr12:121596200-121622200 Weak transcription Esophagus oesophagus
9 chr12:121596200-121625600 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr12:121596200-121629000 Weak transcription Left Ventricle heart
11 chr12:121596400-121634200 Weak transcription Primary hematopoietic stem cells blood
12 chr12:121597800-121625600 Weak transcription Skeletal Muscle Female skeletal muscle
13 chr12:121602400-121634600 Weak transcription Fetal Thymus thymus
14 chr12:121603800-121623600 Weak transcription Fetal Intestine Small intestine
15 chr12:121604400-121622200 Weak transcription Lung lung
16 chr12:121605000-121623400 Weak transcription Primary T regulatory cells fromperipheralblood blood
17 chr12:121610800-121628800 Weak transcription Right Atrium heart
18 chr12:121612600-121630200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
19 chr12:121614000-121623000 Weak transcription Primary B cells from cord blood blood
20 chr12:121614000-121634600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr12:121614200-121622200 Weak transcription Pancreas Pancrea
22 chr12:121614200-121624000 Weak transcription Colon Smooth Muscle Colon
23 chr12:121614200-121628800 Weak transcription Adipose Nuclei Adipose
24 chr12:121615000-121622600 Weak transcription Gastric stomach
25 chr12:121615400-121622200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr12:121615400-121622200 Weak transcription Spleen Spleen
27 chr12:121615600-121623200 Weak transcription Primary T helper cells fromperipheralblood blood
28 chr12:121615800-121625400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr12:121618600-121624200 Strong transcription Brain Hippocampus Middle brain
30 chr12:121618800-121622200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
31 chr12:121619200-121627400 Weak transcription NHLF lung
32 chr12:121619400-121622200 Weak transcription Primary hematopoietic stem cells short term culture blood
33 chr12:121619400-121624200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr12:121619600-121623000 Weak transcription K562 blood
35 chr12:121620200-121626400 Strong transcription Brain Angular Gyrus brain
36 chr12:121620400-121622200 Weak transcription Brain Inferior Temporal Lobe brain
37 chr12:121620400-121622200 Weak transcription Stomach Smooth Muscle stomach
38 chr12:121620400-121622400 Weak transcription Brain Anterior Caudate brain
39 chr12:121620400-121624600 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr12:121620400-121634200 Weak transcription Primary T cells fromperipheralblood blood
41 chr12:121620600-121622200 Weak transcription Brain Cingulate Gyrus brain
42 chr12:121621400-121624400 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
43 chr12:121621600-121622200 Strong transcription Primary monocytes fromperipheralblood blood
44 chr12:121621600-121622400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr12:121621600-121625600 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr12:121621800-121622200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
47 chr12:121621800-121622200 Enhancers NHEK skin
48 chr12:121621800-121623000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr12:121622000-121622800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
50 chr12:121622000-121622800 Enhancers Placenta Placenta

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Last update: Aug 31, 2015