Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511125	1.00[CEU][hapmap]
rs10511126	1.00[CEU][hapmap]
rs13317939	1.00[CEU][hapmap]
rs13325291	1.00[CEU][hapmap]
rs162819	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs162873	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs162874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs162876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs167944	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17016495	1.00[CEU][hapmap]
rs17016507	1.00[CEU][hapmap]
rs17016511	1.00[CEU][hapmap]
rs17016573	1.00[CEU][hapmap]
rs17016593	1.00[CEU][hapmap]
rs2125123	1.00[CEU][hapmap]
rs331132	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331133	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs331159	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs333499	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896433	0.80[EUR][1000 genomes]
rs7619956	1.00[CEU][hapmap]
rs7635300	1.00[CEU][hapmap]
rs9631526	1.00[CEU][hapmap]
rs9822620	1.00[CEU][hapmap]
rs9835586	1.00[CEU][hapmap]
rs9839144	1.00[CEU][hapmap]
rs9839572	1.00[CEU][hapmap]
rs9842144	1.00[CEU][hapmap]
rs9868575	1.00[CEU][hapmap]
rs9871957	1.00[CEU][hapmap]
rs9876637	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78873200-78888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:78875600-78888800	Weak transcription	Fetal Lung	lung
3	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:78883400-78888800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:78883600-78888800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:78884600-78888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:78884800-78888800	Weak transcription	NHDF-Ad	bronchial
8	chr3:78885200-78887200	Weak transcription	HepG2	liver

Quick Search: