Variant report

Variant	rs331132
Chromosome Location	chr3:78889104-78889105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78887158..78889804-chr3:78895316..78898187,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10511125	1.00[CEU][hapmap]
rs10511126	1.00[CEU][hapmap]
rs13317939	1.00[CEU][hapmap]
rs13325291	1.00[CEU][hapmap]
rs162819	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs162873	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs162874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs162875	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs162876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs167944	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17016495	1.00[CEU][hapmap]
rs17016507	1.00[CEU][hapmap]
rs17016511	1.00[CEU][hapmap]
rs17016573	1.00[CEU][hapmap]
rs17016593	1.00[CEU][hapmap]
rs2125123	1.00[CEU][hapmap]
rs331133	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs331159	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs333499	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7619956	1.00[CEU][hapmap]
rs7635300	1.00[CEU][hapmap]
rs9631526	1.00[CEU][hapmap]
rs9822620	1.00[CEU][hapmap]
rs9835586	1.00[CEU][hapmap]
rs9839144	1.00[CEU][hapmap]
rs9839572	1.00[CEU][hapmap]
rs9842144	1.00[CEU][hapmap]
rs9868575	1.00[CEU][hapmap]
rs9871957	1.00[CEU][hapmap]
rs9876637	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:78886200-78895800	Weak transcription	NHLF	lung
3	chr3:78887200-78893000	Enhancers	HepG2	liver
4	chr3:78887400-78889400	Enhancers	Hela-S3	cervix
5	chr3:78887800-78889400	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr3:78887800-78896000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:78888800-78889200	Active TSS	A549	lung
8	chr3:78888800-78889400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:78888800-78889400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:78888800-78889400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:78888800-78889400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr3:78888800-78889400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:78888800-78889400	Enhancers	Brain Angular Gyrus	brain
14	chr3:78888800-78889400	Enhancers	Brain Hippocampus Middle	brain
15	chr3:78888800-78889400	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr3:78888800-78889400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:78888800-78889400	Enhancers	HSMM	muscle
18	chr3:78888800-78889400	Enhancers	HUVEC	blood vessel
19	chr3:78888800-78889400	Enhancers	NH-A	brain
20	chr3:78888800-78889400	Enhancers	NHDF-Ad	bronchial
21	chr3:78888800-78889400	Enhancers	Osteobl	bone
22	chr3:78888800-78889600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr3:78888800-78889800	Enhancers	Brain Substantia Nigra	brain
24	chr3:78889000-78894800	Weak transcription	Fetal Lung	lung

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