Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511125	1.00[CEU][hapmap]
rs10511126	1.00[CEU][hapmap]
rs13317939	1.00[CEU][hapmap]
rs13325291	1.00[CEU][hapmap]
rs162819	1.00[CEU][hapmap]
rs162873	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs162874	0.92[AFR][1000 genomes]
rs162875	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs162876	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs167944	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs17016495	1.00[CEU][hapmap]
rs17016507	1.00[CEU][hapmap]
rs17016511	1.00[CEU][hapmap]
rs17016573	1.00[CEU][hapmap]
rs17016593	1.00[CEU][hapmap]
rs2125123	1.00[CEU][hapmap]
rs331132	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs331133	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs333499	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs62257511	0.85[AFR][1000 genomes]
rs72896433	0.93[EUR][1000 genomes]
rs7619956	1.00[CEU][hapmap]
rs7635300	1.00[CEU][hapmap]
rs9631526	1.00[CEU][hapmap]
rs9822620	1.00[CEU][hapmap]
rs9835586	1.00[CEU][hapmap]
rs9839144	1.00[CEU][hapmap]
rs9839572	1.00[CEU][hapmap]
rs9842144	1.00[CEU][hapmap]
rs9868575	1.00[CEU][hapmap]
rs9871957	1.00[CEU][hapmap]
rs9876637	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3403168	chr3:78890287-78893135	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78882000-78894800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:78886200-78895800	Weak transcription	NHLF	lung
3	chr3:78887200-78893000	Enhancers	HepG2	liver
4	chr3:78887800-78896000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:78889000-78894800	Weak transcription	Fetal Lung	lung
6	chr3:78889400-78896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:78889400-78898800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:78889400-78899000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:78889600-78896200	Weak transcription	A549	lung
10	chr3:78889800-78895800	Weak transcription	Brain Substantia Nigra	brain
11	chr3:78890600-78895800	Weak transcription	Brain Anterior Caudate	brain
12	chr3:78890800-78896000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:78892600-78897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:78893000-78893600	Flanking Active TSS	HepG2	liver
15	chr3:78893000-78895000	Enhancers	Liver	Liver

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