The 2.0 version of rSNPBase

Variant report

Variant rs1649888
Chromosome Location chr2:231336881-231336882
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:92 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:231288800-231356000 Weak transcription Stomach Mucosa stomach
2 chr2:231301800-231345000 Weak transcription A549 lung
3 chr2:231308800-231337000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
4 chr2:231308800-231337400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
5 chr2:231312400-231337000 Weak transcription HepG2 liver
6 chr2:231312400-231337200 Weak transcription Hela-S3 cervix
7 chr2:231321800-231338600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr2:231322200-231340200 Strong transcription Liver Liver
9 chr2:231322600-231338200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr2:231323400-231337600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
11 chr2:231323800-231337800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr2:231325800-231338400 Strong transcription Left Ventricle heart
13 chr2:231325800-231338600 Strong transcription Lung lung
14 chr2:231325800-231338800 Strong transcription Sigmoid Colon Sigmoid Colon
15 chr2:231327000-231337000 Strong transcription HUVEC blood vessel
16 chr2:231328200-231338400 Strong transcription Fetal Muscle Leg muscle
17 chr2:231329600-231343800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr2:231330000-231337400 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr2:231331200-231338400 Strong transcription Rectal Mucosa Donor 31 rectum
20 chr2:231331400-231337000 Weak transcription Brain Hippocampus Middle brain
21 chr2:231332000-231345200 Weak transcription Brain Substantia Nigra brain
22 chr2:231332200-231338200 Weak transcription Fetal Muscle Trunk muscle
23 chr2:231332400-231344400 Weak transcription Gastric stomach
24 chr2:231332800-231339200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr2:231333400-231339800 Genic enhancers Primary B cells from cord blood blood
26 chr2:231334200-231356000 Weak transcription Fetal Intestine Small intestine
27 chr2:231334600-231340000 Genic enhancers Primary B cells from peripheral blood blood
28 chr2:231334800-231337200 Weak transcription NHEK skin
29 chr2:231334800-231358400 Weak transcription Fetal Stomach stomach
30 chr2:231335000-231337400 Weak transcription HMEC breast
31 chr2:231335000-231337600 Strong transcription Primary hematopoietic stem cells blood
32 chr2:231335000-231344400 Weak transcription Aorta Aorta
33 chr2:231335000-231359000 Weak transcription NHLF lung
34 chr2:231335600-231339000 Genic enhancers Primary T helper cells PMA-I stimulated --
35 chr2:231335600-231340200 Weak transcription Fetal Intestine Large intestine
36 chr2:231335600-231344600 Weak transcription Pancreas Pancrea
37 chr2:231336000-231343800 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr2:231336000-231344400 Weak transcription Esophagus oesophagus
39 chr2:231336000-231356000 Weak transcription NHDF-Ad bronchial
40 chr2:231336200-231337000 Genic enhancers Primary T helper naive cells fromperipheralblood blood
41 chr2:231336200-231337200 Genic enhancers Primary monocytes fromperipheralblood blood
42 chr2:231336200-231337400 Weak transcription Placenta Amnion Placenta Amnion
43 chr2:231336200-231342200 Weak transcription Rectal Mucosa Donor 29 rectum
44 chr2:231336200-231344400 Weak transcription HSMMtube muscle
45 chr2:231336400-231337400 Weak transcription NH-A brain
46 chr2:231336400-231337600 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr2:231336400-231337800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr2:231336400-231338000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
49 chr2:231336400-231338400 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr2:231336400-231339200 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015