Variant report

Variant	rs1654924
Chromosome Location	chr3:136692515-136692516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs108858	0.84[ASN][1000 genomes]
rs11711599	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12054220	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095034	0.84[ASN][1000 genomes]
rs1620455	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1682339	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs171519	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs183120	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs183121	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2117008	0.80[ASN][1000 genomes]
rs2344092	0.81[ASN][1000 genomes]
rs361232	0.81[ASN][1000 genomes]
rs361233	0.84[ASN][1000 genomes]
rs361234	0.82[ASN][1000 genomes]
rs361235	0.84[ASN][1000 genomes]
rs361238	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361240	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361249	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs361253	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71620537	0.84[ASN][1000 genomes]
rs835638	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs835652	0.84[ASN][1000 genomes]
rs9845076	0.87[ASN][1000 genomes]
rs9875855	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1654924	IL20RB	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136682200-136694600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:136682200-136694600	Weak transcription	HMEC	breast
3	chr3:136682400-136693000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:136682400-136694600	Weak transcription	NHEK	skin
5	chr3:136682400-136698200	Weak transcription	Hela-S3	cervix
6	chr3:136690600-136694000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:136691600-136693200	Enhancers	HepG2	liver

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