Variant report

Variant	rs1682339
Chromosome Location	chr3:136694886-136694887
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11711599	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12054220	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1620455	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1654924	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs171519	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs183120	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs183121	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361238	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs361240	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361249	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs361253	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs835638	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1682339	IL20RB	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136682400-136698200	Weak transcription	Hela-S3	cervix
2	chr3:136694400-136695200	ZNF genes & repeats	Thymus	Thymus
3	chr3:136694600-136695600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:136694600-136695600	Genic enhancers	Esophagus	oesophagus
5	chr3:136694600-136695600	ZNF genes & repeats	Gastric	stomach
6	chr3:136694600-136695800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:136694600-136695800	Strong transcription	NHEK	skin
8	chr3:136694600-136696000	Strong transcription	HMEC	breast
9	chr3:136694800-136695600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:136694800-136698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:136694800-136699200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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