Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs108858	0.82[ASN][1000 genomes]
rs11711599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12054220	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13095034	0.82[ASN][1000 genomes]
rs1620455	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1654924	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1682339	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs171519	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs183120	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361233	0.82[ASN][1000 genomes]
rs361234	0.81[ASN][1000 genomes]
rs361235	0.82[ASN][1000 genomes]
rs361238	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361240	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361249	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs361253	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71620537	0.82[ASN][1000 genomes]
rs835638	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs835652	0.82[ASN][1000 genomes]
rs9845076	0.85[ASN][1000 genomes]
rs9875855	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs183121	IL20RB	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136682400-136698200	Weak transcription	Hela-S3	cervix
2	chr3:136694800-136698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:136694800-136699200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:136695200-136698200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:136695400-136700600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:136695400-136703600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:136695400-136706200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:136695600-136696600	Weak transcription	Thymus	Thymus
9	chr3:136695600-136698000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:136695600-136698000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:136695600-136698200	Weak transcription	Gastric	stomach
12	chr3:136695600-136700400	Enhancers	Fetal Thymus	thymus
13	chr3:136695800-136698000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:136695800-136698000	Weak transcription	NHEK	skin
15	chr3:136695800-136698200	Weak transcription	Esophagus	oesophagus
16	chr3:136696000-136698200	Weak transcription	HMEC	breast

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