Variant report

Variant	rs1657010
Chromosome Location	chr3:144242847-144242848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1036439	0.84[JPT][hapmap]
rs10935507	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12638544	0.80[ASN][1000 genomes]
rs1405596	0.85[ASN][1000 genomes]
rs1726522	0.83[ASN][1000 genomes]
rs1726536	0.81[ASN][1000 genomes]
rs1726538	0.81[ASN][1000 genomes]
rs2222702	0.82[ASN][1000 genomes]
rs2575189	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2694959	0.82[ASN][1000 genomes]
rs2717380	0.82[ASN][1000 genomes]
rs2717387	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2717388	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2717389	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34130084	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4290842	0.81[ASN][1000 genomes]
rs4681126	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56178175	0.81[ASN][1000 genomes]
rs6440260	0.90[ASN][1000 genomes]
rs721029	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs721030	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73009099	0.81[ASN][1000 genomes]
rs73871205	0.81[ASN][1000 genomes]
rs73871207	0.81[ASN][1000 genomes]
rs73875119	0.81[ASN][1000 genomes]
rs73875127	0.81[ASN][1000 genomes]
rs73875134	0.81[ASN][1000 genomes]
rs73875140	0.81[ASN][1000 genomes]
rs7613909	0.86[ASN][1000 genomes]
rs7637942	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9840395	0.94[JPT][hapmap]
rs9844730	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9856190	0.90[ASN][1000 genomes]
rs9857731	0.81[CEU][hapmap]
rs9866198	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9866442	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9870285	0.84[ASN][1000 genomes]
rs9873732	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9878902	0.96[CEU][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1010388	chr3:144236022-144326640	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1001888	chr3:144239415-144272509	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536753	chr3:144239415-144272509	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1013350	chr3:144239415-144326640	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv536754	chr3:144239415-144326640	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144241800-144243200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:144242400-144243200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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