Variant report

Variant	rs73009099
Chromosome Location	chr3:144212195-144212196
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1036439	0.86[ASN][1000 genomes]
rs10490827	0.93[ASN][1000 genomes]
rs10935507	0.92[ASN][1000 genomes]
rs12631899	0.93[ASN][1000 genomes]
rs12632855	0.92[ASN][1000 genomes]
rs12638468	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12638544	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12639461	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13081974	0.98[ASN][1000 genomes]
rs1657010	0.81[ASN][1000 genomes]
rs1815189	0.84[ASN][1000 genomes]
rs34130084	0.81[ASN][1000 genomes]
rs4290842	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4388021	0.81[ASN][1000 genomes]
rs4681126	0.94[ASN][1000 genomes]
rs56096828	0.93[ASN][1000 genomes]
rs56178175	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56191622	0.87[ASN][1000 genomes]
rs56228220	0.93[ASN][1000 genomes]
rs57393618	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59900584	0.92[ASN][1000 genomes]
rs61641065	0.87[ASN][1000 genomes]
rs73871205	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73871207	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73871211	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73871221	0.92[ASN][1000 genomes]
rs73871228	0.86[ASN][1000 genomes]
rs73871240	0.83[ASN][1000 genomes]
rs73871243	0.83[ASN][1000 genomes]
rs73871244	0.83[ASN][1000 genomes]
rs73871245	0.83[ASN][1000 genomes]
rs73871248	0.83[ASN][1000 genomes]
rs73871252	0.83[ASN][1000 genomes]
rs73875119	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875127	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875134	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73875140	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7611785	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7630402	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7636316	0.92[ASN][1000 genomes]
rs7637942	0.93[ASN][1000 genomes]
rs920146	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9844730	0.92[ASN][1000 genomes]
rs9866198	0.93[ASN][1000 genomes]
rs9866442	0.94[ASN][1000 genomes]
rs9873732	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv822275	chr3:144211596-144212386	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144210800-144215400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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