Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1348182	0.99[ASN][1000 genomes]
rs1626475	0.96[ASN][1000 genomes]
rs1629869	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1661169	0.96[ASN][1000 genomes]
rs1661171	0.96[ASN][1000 genomes]
rs1661172	0.88[ASN][1000 genomes]
rs1661173	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1661174	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1661175	0.92[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs1661176	0.92[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs1727747	0.92[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs1727748	0.92[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs1727749	0.96[ASN][1000 genomes]
rs1727750	0.96[ASN][1000 genomes]
rs1727751	0.92[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs1727753	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1727755	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1727756	0.83[AMR][1000 genomes]
rs1727757	0.92[CHB][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1727759	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6509165	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7258420	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8111044	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062812	chr19:45042262-45214796	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45048000-45052200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:45051800-45052600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr19:45051800-45052600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr19:45052000-45052400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr19:45052000-45052600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:45052000-45052600	Enhancers	HMEC	breast

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