Variant report
| Variant | rs1727755 |
|---|---|
| Chromosome Location | chr19:45061580-45061581 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr19:45061252-45061607 | T-47D | breast: | n/a | n/a |
| 2 | SIN3AK20 | chr19:45061047-45061674 | MCF-7 | breast: | n/a | n/a |
| 3 | FOSL2 | chr19:45061154-45061591 | MCF-7 | breast: | n/a | n/a |
| 4 | SIN3AK20 | chr19:45061003-45061751 | MCF-7 | breast: | n/a | n/a |
| 5 | CEBPB | chr19:45061252-45061609 | MCF-7 | breast: | n/a | n/a |
| 6 | TCF12 | chr19:45061184-45061626 | MCF-7 | breast: | n/a | n/a |
| 7 | GATA3 | chr19:45060857-45061715 | MCF-7 | breast: | n/a | n/a |
| 8 | GATA3 | chr19:45061122-45061637 | MCF-7 | breast: | n/a | n/a |
| 9 | JUND | chr19:45061283-45061666 | MCF-7 | breast: | n/a | n/a |
| 10 | MAX | chr19:45061301-45061614 | MCF-7 | breast: | n/a | n/a |
| 11 | NR2F2 | chr19:45061101-45061605 | MCF-7 | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CEACAM22P | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs1629869 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1661167 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1727753 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1727756 | 0.98[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1727757 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1727759 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6509165 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7254730 | 0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7258420 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs957304 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062812 | chr19:45042262-45214796 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
