Variant report
| Variant | rs1727757 |
|---|---|
| Chromosome Location | chr19:45064435-45064436 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:7)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:7 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOXA1 | chr19:45064371-45064747 | HepG2 | liver: | n/a | n/a |
| 2 | CEBPB | chr19:45064421-45064643 | K562 | blood: | n/a | n/a |
| 3 | FOXA1 | chr19:45064226-45064756 | HepG2 | liver: | n/a | n/a |
| 4 | CEBPB | chr19:45064391-45064653 | HepG2 | liver: | n/a | n/a |
| 5 | CEBPB | chr19:45064393-45064595 | MCF-7 | breast: | n/a | n/a |
| 6 | FOXA2 | chr19:45064333-45064611 | HepG2 | liver: | n/a | n/a |
| 7 | FOXA1 | chr19:45064388-45064682 | HepG2 | liver: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| CEACAM22P | TF binding region |
| ENSG00000167384 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1629869 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1661167 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1661173 | 0.92[CHB][hapmap];0.92[GIH][hapmap];0.81[LWK][hapmap];0.91[TSI][hapmap] |
| rs1661174 | 0.91[CHB][hapmap] |
| rs1661175 | 0.83[CHB][hapmap] |
| rs1661176 | 0.83[CHB][hapmap] |
| rs1727747 | 0.83[CHB][hapmap] |
| rs1727748 | 0.83[CHB][hapmap] |
| rs1727751 | 0.83[CHB][hapmap] |
| rs1727753 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1727755 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1727756 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1727759 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6509165 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7254730 | 0.83[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7258420 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs957304 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062812 | chr19:45042262-45214796 | Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:45063800-45065200 | Enhancers | HepG2 | liver |
