Variant report

Variant	rs1663648
Chromosome Location	chr2:184281816-184281817
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1098912	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1098919	0.97[AFR][1000 genomes]
rs1098920	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2091739	1.00[EUR][1000 genomes]
rs2103379	1.00[EUR][1000 genomes]
rs2118474	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2164852	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56395447	1.00[EUR][1000 genomes]
rs57756154	1.00[EUR][1000 genomes]
rs57962549	1.00[EUR][1000 genomes]
rs58831964	0.81[AFR][1000 genomes]
rs59225772	1.00[EUR][1000 genomes]
rs59781911	1.00[EUR][1000 genomes]
rs59897746	1.00[EUR][1000 genomes]
rs73040580	1.00[EUR][1000 genomes]
rs73042641	1.00[EUR][1000 genomes]
rs73042643	1.00[EUR][1000 genomes]
rs842540	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842547	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842550	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842558	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842559	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842560	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842562	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842565	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842570	1.00[EUR][1000 genomes]
rs842571	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842577	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842582	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842588	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842589	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842592	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs842594	0.83[AFR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:184281200-184282000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:184281200-184282200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:184281400-184282000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:184281400-184282000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr2:184281400-184282200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr2:184281400-184282200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:184281400-184282200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:184281400-184282400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:184281400-184282800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:184281400-184283200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:184281600-184282000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:184281600-184282200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:184281600-184282200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:184281600-184282200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:184281600-184282200	Enhancers	Pancreas	Pancrea
16	chr2:184281600-184282800	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links