Variant report

Variant	rs1666567
Chromosome Location	chr15:57827111-57827112
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57819966..57822646-chr15:57824885..57827415,2	K562	blood:
2	chr15:57817814..57821842-chr15:57824294..57827570,5	K562	blood:

Variant related genes	Relation type
ENSG00000261265	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10220805	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10518923	0.92[TSI][hapmap]
rs10775165	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10851614	0.92[TSI][hapmap]
rs10851616	0.80[JPT][hapmap];0.82[AMR][1000 genomes]
rs11071323	0.92[TSI][hapmap]
rs11071324	0.82[AMR][1000 genomes]
rs11071325	0.81[JPT][hapmap];0.82[AMR][1000 genomes]
rs11071326	0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs11630712	0.81[EUR][1000 genomes]
rs11630713	0.81[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11630740	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11634739	0.82[CHD][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12323972	0.82[AMR][1000 genomes]
rs12437888	0.92[TSI][hapmap]
rs12439099	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12439126	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12591696	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12593650	0.82[EUR][1000 genomes]
rs12593685	0.82[EUR][1000 genomes]
rs12595135	0.81[CHD][hapmap];0.92[TSI][hapmap];0.81[EUR][1000 genomes]
rs12595169	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1319900	0.91[CHB][hapmap];0.83[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16977558	0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16977560	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16977561	0.85[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16977567	0.85[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.96[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16977585	1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1980048	0.82[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes]
rs1994888	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1994889	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2131740	0.82[CHD][hapmap];0.82[JPT][hapmap];0.92[TSI][hapmap]
rs2172607	0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2172613	0.82[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes]
rs2172614	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414510	0.82[AMR][1000 genomes]
rs2414511	0.89[ASN][1000 genomes]
rs2942043	0.92[TSI][hapmap]
rs34947057	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs35709805	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4545749	0.81[JPT][hapmap];0.80[AMR][1000 genomes]
rs55653578	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs57900088	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7164486	0.82[CHD][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7182268	0.91[CHB][hapmap];0.89[CHD][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7496403	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs878425	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs932028	0.92[TSI][hapmap]
rs932029	0.84[TSI][hapmap]
rs9806311	0.93[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
4	chr15:57811000-57827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:57817200-57827800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:57819200-57841000	Weak transcription	Esophagus	oesophagus
7	chr15:57819800-57829200	Weak transcription	Ovary	ovary
8	chr15:57819800-57833000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:57819800-57840000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr15:57820200-57829200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:57820200-57829400	Weak transcription	Brain Angular Gyrus	brain
12	chr15:57820600-57834000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:57821800-57842800	Strong transcription	Liver	Liver
14	chr15:57822400-57829000	Weak transcription	Gastric	stomach
15	chr15:57822600-57829200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr15:57822800-57833000	Weak transcription	HepG2	liver
17	chr15:57822800-57834000	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:57823000-57827600	Enhancers	Fetal Heart	heart
19	chr15:57823000-57828800	Weak transcription	Pancreas	Pancrea
20	chr15:57823600-57828800	Weak transcription	HSMMtube	muscle
21	chr15:57824400-57827200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:57824400-57827600	Enhancers	Fetal Lung	lung
23	chr15:57824800-57827400	Enhancers	Brain Anterior Caudate	brain
24	chr15:57824800-57827400	Enhancers	Placenta	Placenta
25	chr15:57825000-57827200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
26	chr15:57825000-57827800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:57825000-57835800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:57825200-57827400	Enhancers	Left Ventricle	heart
29	chr15:57825400-57828600	Weak transcription	Fetal Kidney	kidney
30	chr15:57825400-57831200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:57825800-57827200	Enhancers	Adipose Nuclei	Adipose
32	chr15:57825800-57827400	Enhancers	Fetal Muscle Leg	muscle
33	chr15:57825800-57827400	Enhancers	NHDF-Ad	bronchial
34	chr15:57825800-57827600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:57825800-57828000	Enhancers	Spleen	Spleen
36	chr15:57826000-57834200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr15:57826200-57827200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
38	chr15:57826200-57827400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr15:57826200-57827600	Enhancers	Fetal Stomach	stomach
40	chr15:57826200-57827600	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr15:57826200-57829000	Weak transcription	Right Atrium	heart
42	chr15:57826200-57829200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:57826200-57829200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:57826200-57829200	Weak transcription	Brain Substantia Nigra	brain
45	chr15:57826200-57829200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr15:57826600-57827400	Enhancers	H9 Cell Line	embryonic stem cell
47	chr15:57826600-57827400	Enhancers	HUVEC	blood vessel
48	chr15:57826600-57829000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:57826600-57829000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:57826800-57827200	Genic enhancers	iPS-20b Cell Line	embryonic stem cell

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