Variant report

Variant	rs12437888
Chromosome Location	chr15:57787148-57787149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57777677..57780127-chr15:57786834..57789579,2	K562	blood:
2	chr15:57785599..57788871-chr15:57789912..57793304,3	MCF-7	breast:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10220805	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10518923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10775165	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10851614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10851615	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10851616	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10851617	0.89[EUR][1000 genomes]
rs11071323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11071324	0.91[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11071325	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11071326	0.91[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs11630712	0.90[EUR][1000 genomes]
rs11630713	0.90[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11630740	0.88[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11631943	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11634739	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11637220	0.92[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11637265	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12323972	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12438901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439099	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12439126	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12440928	0.92[CEU][hapmap];0.90[CHB][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12441608	0.89[EUR][1000 genomes]
rs12442969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12592077	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12593650	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs12593685	0.91[EUR][1000 genomes]
rs12593721	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594455	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12594504	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12595135	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12595169	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1280381	0.92[ASN][1000 genomes]
rs1280387	0.84[CEU][hapmap];0.89[EUR][1000 genomes]
rs1666567	0.92[TSI][hapmap]
rs16977531	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16977534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16977558	0.92[CEU][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16977560	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs16977561	0.92[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs16977567	0.96[TSI][hapmap];0.82[EUR][1000 genomes]
rs1980048	0.91[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs1994888	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1994889	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2087981	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2131740	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2172613	0.92[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2172614	0.92[TSI][hapmap]
rs2414510	0.86[EUR][1000 genomes]
rs2942043	1.00[CEU][hapmap];0.92[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4545749	0.91[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[EUR][1000 genomes]
rs58161678	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58253526	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7164486	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7182268	0.81[TSI][hapmap]
rs7496403	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs932028	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs932029	0.92[CEU][hapmap];0.92[TSI][hapmap];0.91[EUR][1000 genomes]
rs955206	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs966693	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv2751536	chr15:57627408-57788408	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv457170	chr15:57644456-57790436	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv569588	chr15:57644456-57790436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2763103	chr15:57781577-57799765	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57749800-57787400	Weak transcription	Ovary	ovary
2	chr15:57771000-57795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:57771600-57787400	Weak transcription	Fetal Kidney	kidney
4	chr15:57771600-57787600	Weak transcription	Fetal Stomach	stomach
5	chr15:57778200-57798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:57778600-57789000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:57779000-57788600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:57779000-57789000	Weak transcription	Esophagus	oesophagus
9	chr15:57779000-57794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:57779000-57794400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:57779000-57797600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:57779000-57798200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:57779200-57788600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:57779400-57794200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:57779400-57800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:57781000-57787400	Weak transcription	Lung	lung
17	chr15:57783200-57787400	Weak transcription	Placenta	Placenta
18	chr15:57785000-57787600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:57786400-57787400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:57786600-57787800	Enhancers	Stomach Smooth Muscle	stomach
21	chr15:57786600-57790000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:57786800-57787200	Enhancers	Aorta	Aorta
23	chr15:57786800-57787200	Flanking Active TSS	Fetal Heart	heart
24	chr15:57786800-57787400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:57786800-57787600	Enhancers	Gastric	stomach
26	chr15:57786800-57787600	Enhancers	Right Atrium	heart
27	chr15:57786800-57787800	Enhancers	Left Ventricle	heart
28	chr15:57786800-57788000	Enhancers	Primary B cells from peripheral blood	blood
29	chr15:57786800-57788000	Enhancers	Fetal Muscle Leg	muscle
30	chr15:57786800-57788000	Enhancers	GM12878-XiMat	blood
31	chr15:57786800-57789000	Enhancers	HepG2	liver
32	chr15:57786800-57790000	Enhancers	Right Ventricle	heart
33	chr15:57787000-57787600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:57787000-57787600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:57787000-57787600	Genic enhancers	Liver	Liver
36	chr15:57787000-57787600	Enhancers	Fetal Muscle Trunk	muscle
37	chr15:57787000-57787800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:57787000-57787800	Enhancers	NHDF-Ad	bronchial
39	chr15:57787000-57788200	Enhancers	HUVEC	blood vessel
40	chr15:57787000-57789200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:57787000-57790200	Enhancers	Fetal Intestine Large	intestine
42	chr15:57787000-57790400	Enhancers	Fetal Lung	lung
43	chr15:57787000-57791000	Enhancers	Pancreas	Pancrea

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