Variant report

Variant	rs10851617
Chromosome Location	chr15:57803237-57803238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57797927..57800913-chr15:57801647..57804497,4	K562	blood:
2	chr15:57797159..57800107-chr15:57801647..57804598,2	K562	blood:
3	chr15:57797923..57800458-chr15:57801909..57803943,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10220805	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518923	0.90[EUR][1000 genomes]
rs10775165	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10851614	0.89[EUR][1000 genomes]
rs10851615	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10851616	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071323	0.90[EUR][1000 genomes]
rs11071324	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071325	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071326	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11630712	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630713	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630740	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11631943	0.90[EUR][1000 genomes]
rs11634739	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635065	0.90[ASN][1000 genomes]
rs11637220	0.89[EUR][1000 genomes]
rs11637265	0.90[EUR][1000 genomes]
rs12323972	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437888	0.89[EUR][1000 genomes]
rs12438901	0.89[EUR][1000 genomes]
rs12439099	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12439126	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12440928	0.88[EUR][1000 genomes]
rs12441608	0.83[EUR][1000 genomes]
rs12442969	0.89[EUR][1000 genomes]
rs12592077	0.90[EUR][1000 genomes]
rs12593650	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12593685	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12593721	0.90[EUR][1000 genomes]
rs12594455	0.89[EUR][1000 genomes]
rs12594504	0.89[EUR][1000 genomes]
rs12595135	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595169	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280387	0.88[EUR][1000 genomes]
rs16977531	0.90[EUR][1000 genomes]
rs16977534	0.89[EUR][1000 genomes]
rs16977558	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16977560	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16977561	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16977567	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1980048	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1994888	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1994889	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2087981	0.91[EUR][1000 genomes]
rs2131740	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172613	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172614	0.83[AMR][1000 genomes]
rs2414510	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2942043	0.90[EUR][1000 genomes]
rs4545749	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58161678	0.89[EUR][1000 genomes]
rs58253526	0.89[EUR][1000 genomes]
rs7164486	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167112	0.85[ASN][1000 genomes]
rs7496403	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs932028	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs932029	0.85[EUR][1000 genomes]
rs955206	0.90[EUR][1000 genomes]
rs966693	0.81[EUR][1000 genomes]
rs9806311	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
2	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:57797000-57814000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:57798000-57805200	Enhancers	Fetal Heart	heart
6	chr15:57798400-57809400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:57798600-57808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:57799000-57809000	Weak transcription	HepG2	liver
9	chr15:57800000-57803400	Enhancers	Primary B cells from peripheral blood	blood
10	chr15:57801200-57803600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:57801400-57803600	Enhancers	Fetal Lung	lung
12	chr15:57801600-57803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:57801600-57808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:57801800-57808400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr15:57801800-57808800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:57801800-57808800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:57801800-57809000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr15:57801800-57819000	Weak transcription	Esophagus	oesophagus
19	chr15:57802000-57804000	Enhancers	HUVEC	blood vessel
20	chr15:57802000-57807400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:57802000-57808600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:57802000-57808800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:57802000-57810600	Weak transcription	Fetal Brain Female	brain
24	chr15:57802000-57819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:57802200-57803600	Enhancers	NH-A	brain
26	chr15:57802200-57804600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:57802200-57805800	Enhancers	Stomach Mucosa	stomach
28	chr15:57802400-57804400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:57802600-57807400	Weak transcription	Liver	Liver
30	chr15:57802600-57808800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:57802800-57808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:57802800-57809000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
35	chr15:57803000-57805000	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr15:57803000-57809200	Weak transcription	Fetal Kidney	kidney
37	chr15:57803000-57818800	Weak transcription	Fetal Intestine Large	intestine
38	chr15:57803200-57804200	Weak transcription	Gastric	stomach
39	chr15:57803200-57804200	Weak transcription	Pancreas	Pancrea
40	chr15:57803200-57808400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:57803200-57808600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:57803200-57808600	Weak transcription	Fetal Muscle Leg	muscle
43	chr15:57803200-57808600	Weak transcription	Placenta	Placenta
44	chr15:57803200-57808600	Weak transcription	Fetal Stomach	stomach
45	chr15:57803200-57808800	Weak transcription	Fetal Intestine Small	intestine
46	chr15:57803200-57808800	Weak transcription	Lung	lung
47	chr15:57803200-57809200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:57803200-57819400	Weak transcription	Ovary	ovary
49	chr15:57803200-57842800	Weak transcription	Aorta	Aorta

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