Variant report

Variant	rs10851615
Chromosome Location	chr15:57796318-57796319
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57782161..57783961-chr15:57796230..57798996,2	K562	blood:
2	chr15:57790627..57792700-chr15:57796168..57798230,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10220805	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10518923	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10775165	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10851614	0.85[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10851616	0.92[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10851617	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071323	0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11071324	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071325	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11071326	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11630712	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630713	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630740	0.89[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11631943	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11634739	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11635065	0.85[ASN][1000 genomes]
rs11637220	0.87[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11637265	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12323972	0.93[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437888	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12438901	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12439099	0.91[CEU][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439126	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440928	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12442969	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12592077	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12593650	0.90[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12593685	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12593721	0.86[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12594455	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12594504	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12595135	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12595169	0.93[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1280387	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs16977531	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16977534	0.86[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16977558	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16977560	0.92[CEU][hapmap];0.83[CHB][hapmap];0.87[JPT][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16977561	0.92[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16977567	0.86[JPT][hapmap];0.88[AMR][1000 genomes]
rs1980048	0.92[CEU][hapmap];0.92[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1994888	0.86[CEU][hapmap];0.83[AMR][1000 genomes]
rs1994889	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs2087981	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2131740	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2172613	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2172614	0.83[AMR][1000 genomes]
rs2414510	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2942043	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4545749	0.92[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58161678	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58253526	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7164486	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7167112	0.81[ASN][1000 genomes]
rs7496403	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs932028	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs932029	0.83[JPT][hapmap]
rs955206	0.86[CEU][hapmap];0.84[CHB][hapmap];0.96[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9806311	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1045620	chr15:57680733-57804237	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2763103	chr15:57781577-57799765	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57778200-57798400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:57779000-57797600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:57779000-57798200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:57779400-57800800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:57787200-57802000	Weak transcription	Aorta	Aorta
6	chr15:57788200-57797600	Enhancers	Fetal Heart	heart
7	chr15:57789800-57801600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr15:57790000-57796800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:57790000-57797800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
11	chr15:57790200-57797600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:57790200-57799000	Enhancers	HepG2	liver
13	chr15:57790200-57801400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:57791400-57796400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:57792000-57799000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr15:57792000-57799000	Enhancers	Pancreas	Pancrea
17	chr15:57792200-57799000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:57793000-57797000	Enhancers	Right Ventricle	heart
19	chr15:57793000-57799400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:57793200-57799400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:57793200-57800200	Enhancers	Stomach Mucosa	stomach
22	chr15:57793400-57796600	Enhancers	Liver	Liver
23	chr15:57793400-57798000	Enhancers	Esophagus	oesophagus
24	chr15:57793400-57803200	Enhancers	Placenta	Placenta
25	chr15:57793600-57797000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:57793600-57801000	Weak transcription	HSMMtube	muscle
27	chr15:57793600-57803200	Enhancers	Fetal Intestine Small	intestine
28	chr15:57793800-57797400	Weak transcription	Osteobl	bone
29	chr15:57793800-57802000	Enhancers	Fetal Intestine Large	intestine
30	chr15:57794200-57797200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:57794400-57796800	Weak transcription	NH-A	brain
33	chr15:57794600-57796400	Weak transcription	Fetal Lung	lung
34	chr15:57794600-57797400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr15:57794800-57797800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr15:57794800-57798200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:57795000-57797400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr15:57795000-57797400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr15:57795200-57796400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:57795200-57796400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr15:57795200-57797400	Enhancers	Gastric	stomach
42	chr15:57795200-57800400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:57795200-57801600	Weak transcription	Small Intestine	intestine
44	chr15:57795400-57797600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr15:57795400-57800800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:57795600-57796400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:57795600-57796800	Enhancers	Stomach Smooth Muscle	stomach
48	chr15:57795600-57798000	Enhancers	Lung	lung
49	chr15:57795600-57798200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:57795600-57799000	Enhancers	NHDF-Ad	bronchial

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