Variant report

Variant	rs7167112
Chromosome Location	chr15:57808593-57808594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10220805	0.85[CEU][hapmap]
rs10775165	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs10851615	0.81[ASN][1000 genomes]
rs10851616	0.84[CEU][hapmap];0.87[ASN][1000 genomes]
rs10851617	0.85[ASN][1000 genomes]
rs11071324	0.84[CEU][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs11071325	0.83[ASN][1000 genomes]
rs11071326	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs11630712	0.86[ASN][1000 genomes]
rs11630713	0.84[CEU][hapmap];0.86[ASN][1000 genomes]
rs11630740	0.88[CEU][hapmap];0.85[ASN][1000 genomes]
rs11634739	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs11635065	0.95[ASN][1000 genomes]
rs12323972	0.85[CEU][hapmap]
rs12439099	0.83[CEU][hapmap];0.87[ASN][1000 genomes]
rs12439126	0.87[ASN][1000 genomes]
rs12593650	0.90[CEU][hapmap];0.80[JPT][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12593685	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12595135	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs12595169	0.85[CEU][hapmap];0.81[ASN][1000 genomes]
rs16977558	0.83[CEU][hapmap];0.86[JPT][hapmap];0.94[ASN][1000 genomes]
rs16977560	0.84[CEU][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs16977561	0.83[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16977567	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1980048	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1994888	0.92[CEU][hapmap];0.82[JPT][hapmap]
rs1994889	0.92[CEU][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs2131740	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs2172613	0.83[CEU][hapmap];0.85[ASN][1000 genomes]
rs2414510	0.81[ASN][1000 genomes]
rs4545749	0.84[CEU][hapmap];0.85[ASN][1000 genomes]
rs7164486	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7496403	0.87[ASN][1000 genomes]
rs9806311	0.85[CEU][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1054547	chr15:57600488-57977659	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv833022	chr15:57657412-57830112	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904255	chr15:57790436-57907574	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57790000-57808600	Weak transcription	Fetal Brain Male	brain
2	chr15:57794200-57808800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:57797000-57814000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:57797000-57827200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:57798400-57809400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:57798600-57808600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:57799000-57809000	Weak transcription	HepG2	liver
8	chr15:57801600-57808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:57801800-57808800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:57801800-57808800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:57801800-57809000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:57801800-57819000	Weak transcription	Esophagus	oesophagus
13	chr15:57802000-57808600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:57802000-57808800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:57802000-57810600	Weak transcription	Fetal Brain Female	brain
16	chr15:57802000-57819600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:57802600-57808800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:57802600-57846600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:57802800-57808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:57802800-57809000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr15:57802800-57822600	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:57803000-57809200	Weak transcription	Fetal Kidney	kidney
23	chr15:57803000-57818800	Weak transcription	Fetal Intestine Large	intestine
24	chr15:57803200-57808600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:57803200-57808600	Weak transcription	Fetal Muscle Leg	muscle
26	chr15:57803200-57808600	Weak transcription	Placenta	Placenta
27	chr15:57803200-57808600	Weak transcription	Fetal Stomach	stomach
28	chr15:57803200-57808800	Weak transcription	Fetal Intestine Small	intestine
29	chr15:57803200-57808800	Weak transcription	Lung	lung
30	chr15:57803200-57809200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:57803200-57819400	Weak transcription	Ovary	ovary
32	chr15:57803200-57842800	Weak transcription	Aorta	Aorta
33	chr15:57803600-57808600	Weak transcription	Fetal Lung	lung
34	chr15:57804000-57810800	Weak transcription	HUVEC	blood vessel
35	chr15:57805000-57808800	Weak transcription	Gastric	stomach
36	chr15:57805400-57808800	Weak transcription	Pancreas	Pancrea
37	chr15:57805400-57814200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:57807000-57816200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr15:57807000-57818400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:57807400-57814200	Strong transcription	Liver	Liver
41	chr15:57808400-57808800	Enhancers	Fetal Heart	heart
42	chr15:57808400-57809000	Enhancers	Stomach Mucosa	stomach
43	chr15:57808400-57810000	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr15:57808400-57817200	Strong transcription	H1 Cell Line	embryonic stem cell

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